bio-sequence alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view bio-sequence alternatives based on common mentions on social networks and blogs.

• hemokit

  8.4 0.0 bio-sequence VS hemokit

  Haskell library for the Emotiv EEG, inspired by the Emokit code

• cobot

  7.7 0.0 bio-sequence VS cobot

  Computational biology toolkit to collaborate with researchers in constructive protein engineering
  

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• cobot-io

  7.3 0.0 bio-sequence VS cobot-io

  Biological data file formats and IO
  

• hPDB

  7.2 0.0 bio-sequence VS hPDB

  PDB parser in Haskell
  

• samtools

  6.8 0.0 bio-sequence VS samtools

  [Moved to: https://github.com/ingolia/SamTools]

• RNAlien

  6.6 0.0 bio-sequence VS RNAlien

  RNAlien - unsupervised RNA family model construction

• Genbank

  5.6 0.0 bio-sequence VS Genbank

  Genbank format tools and parser

• BlastHTTP

  5.4 0.0 bio-sequence VS BlastHTTP

  Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

• bioinformatics-toolkit

  5.4 0.0 bio-sequence VS bioinformatics-toolkit

  A collection of bioinformatics algorithms

• cmv

  5.3 0.0 bio-sequence VS cmv

  Visualize HMMs, CMs and their comparisons

• phybin

  5.2 0.0 bio-sequence VS phybin

  Binning (Newick) Phylogenetic Trees by Topology

• FormalGrammars

  5.1 0.0 bio-sequence VS FormalGrammars

  Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

• cobot-tools

  5.0 3.6 bio-sequence VS cobot-tools

  Biological data file formats and IO

• vcf

  5.0 0.0 bio-sequence VS vcf

  Haskell library to handle VCF (Variant Call Format) files

• EntrezHTTP

  4.8 0.0 bio-sequence VS EntrezHTTP

  Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

• TaxonomyTools

  4.3 0.0 bio-sequence VS TaxonomyTools

  Tools to process and visualize NCBI taxonomy data

• Taxonomy

  4.1 0.0 bio-sequence VS Taxonomy

  Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

• SelectSequencesFromMSA

  4.0 0.0 bio-sequence VS SelectSequencesFromMSA

  Tool to select representative sequences from a multiple sequence alignment

• ViennaRNAParser

  3.6 0.0 bio-sequence VS ViennaRNAParser

  Libary for parsing ViennaRNA package output

• ClustalParser

  3.1 0.0 bio-sequence VS ClustalParser

  Parse output of Clustal tools

• memexml

  2.9 0.0 bio-sequence VS memexml

  Haskell cabal libary for parsing Meme motif finder xml output

• BioHMM

  2.9 0.0 bio-sequence VS BioHMM

  Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.

• StockholmAlignment

  2.8 0.0 bio-sequence VS StockholmAlignment

  Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.

• seqloc

  2.4 0.0 bio-sequence VS seqloc

  Bio.SeqLoc

• Forestry

  2.4 0.0 bio-sequence VS Forestry

  Science and craft of forests

• Gene-CluEDO

  2.2 0.0 bio-sequence VS Gene-CluEDO

  Gene Cluster Evolution Determined Order

• ADPfusionForest

  2.1 0.0 bio-sequence VS ADPfusionForest

  Dynamic programming on tree and forest structures

• MutationOrder

  1.8 0.0 bio-sequence VS MutationOrder

  most likely order of mutation events in RNA

• uniprot-kb

  1.5 0.0 bio-sequence VS uniprot-kb

  UniProt-KB format parser
  

• rank-product

  1.1 0.0 bio-sequence VS rank-product

  Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.

• mmtf

  0.6 0.0 bio-sequence VS mmtf

  MMTF for Haskell

Do you think we are missing an alternative of bio-sequence or a related project?

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Popular Comparisons

• MutationOrder
  vs
  Gene-CluEDO
• memexml
  vs
  TaxonomyTools
• Taxonomy
  vs
  rank-product
• ClustalParser
  vs
  MutationOrder
• BioHMM
  vs
  rank-product

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