bio-sequence alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view bio-sequence alternatives based on common mentions on social networks and blogs.

hemokit

8.4 0.0 bio-sequence VS hemokit

Haskell library for the Emotiv EEG, inspired by the Emokit code
cobot

7.7 1.8 bio-sequence VS cobot

Computational biology toolkit to collaborate with researchers in constructive protein engineering

InfluxDB high-performance time series database

Collect, organize, and act on massive volumes of high-resolution data to power real-time intelligent systems.

Promo influxdata.com

cobot-io

7.3 3.2 bio-sequence VS cobot-io

Biological data file formats and IO
hPDB

7.1 0.0 bio-sequence VS hPDB

PDB parser in Haskell
samtools

6.8 0.0 bio-sequence VS samtools

DISCONTINUED. [Moved to: https://github.com/ingolia/SamTools]
RNAlien

6.3 0.0 bio-sequence VS RNAlien

RNAlien - unsupervised RNA family model construction
phybin

6.2 0.0 bio-sequence VS phybin

Binning (Newick) Phylogenetic Trees by Topology
bioinformatics-toolkit

5.7 0.0 bio-sequence VS bioinformatics-toolkit

A collection of bioinformatics algorithms
BlastHTTP

5.2 0.0 bio-sequence VS BlastHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
Genbank

5.2 0.0 bio-sequence VS Genbank

Genbank format tools and parser
FormalGrammars

5.1 0.0 bio-sequence VS FormalGrammars

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)
vcf

5.0 0.0 bio-sequence VS vcf

Haskell library to handle VCF (Variant Call Format) files
cobot-tools

5.0 3.6 bio-sequence VS cobot-tools

DISCONTINUED. Biological data file formats and IO
cmv

4.7 0.0 bio-sequence VS cmv

Visualize HMMs, CMs and their comparisons
EntrezHTTP

4.4 0.0 bio-sequence VS EntrezHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
TaxonomyTools

4.1 0.0 bio-sequence VS TaxonomyTools

Tools to process and visualize NCBI taxonomy data
SelectSequencesFromMSA

3.9 0.0 bio-sequence VS SelectSequencesFromMSA

Tool to select representative sequences from a multiple sequence alignment
Taxonomy

3.8 0.0 bio-sequence VS Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
ViennaRNAParser

3.3 0.0 bio-sequence VS ViennaRNAParser

Libary for parsing ViennaRNA package output
ClustalParser

3.2 0.0 bio-sequence VS ClustalParser

Parse output of Clustal tools
StockholmAlignment

2.9 0.0 bio-sequence VS StockholmAlignment

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.
BioHMM

2.8 0.0 bio-sequence VS BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.
memexml

2.8 0.0 bio-sequence VS memexml

Haskell cabal libary for parsing Meme motif finder xml output
Forestry

2.1 0.0 bio-sequence VS Forestry

Science and craft of forests
Gene-CluEDO

1.9 0.0 bio-sequence VS Gene-CluEDO

Gene Cluster Evolution Determined Order
ADPfusionForest

1.9 0.0 bio-sequence VS ADPfusionForest

Dynamic programming on tree and forest structures
MutationOrder

1.6 0.0 bio-sequence VS MutationOrder

most likely order of mutation events in RNA
uniprot-kb

1.3 0.0 bio-sequence VS uniprot-kb

UniProt-KB format parser
rank-product

1.2 0.0 bio-sequence VS rank-product

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
seqloc

1.2 0.0 bio-sequence VS seqloc

Bio.SeqLoc
mmtf

0.7 0.0 bio-sequence VS mmtf

MMTF for Haskell