BiobaseEnsembl alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view BiobaseEnsembl alternatives based on common mentions on social networks and blogs.

too-many-cells

9.0 0.0 BiobaseEnsembl VS too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.
hyraxAbif

6.1 0.0 BiobaseEnsembl VS hyraxAbif

ABIF parser, writer and generator

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BiobaseHTTP

5.1 0.0 BiobaseEnsembl VS BiobaseHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
elynx-seq

4.9 0.0 BiobaseEnsembl VS elynx-seq

Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.
birch-beer

4.9 0.0 BiobaseEnsembl VS birch-beer

Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.
hierarchical-spectral-clustering

4.8 0.0 BiobaseEnsembl VS hierarchical-spectral-clustering

Hierarchical spectral clustering of a graph.
zsyntax

3.8 0.0 BiobaseEnsembl VS zsyntax

Automated theorem prover for a linear logic-based calculus for molecular biology.
modularity

3.7 0.0 BiobaseEnsembl VS modularity

Find the modularity of a network.
differential

3.1 0.0 BiobaseEnsembl VS differential

Finds out whether an entity comes from different distributions (statuses).
integreat

2.6 0.0 BiobaseEnsembl VS integreat

Integrate difference data sources and optionally perform differential integration.
ViennaRNA-extras

2.1 0.0 BiobaseEnsembl VS ViennaRNA-extras

ViennaRNA v2 extensions in Haskell
subsample

1.9 0.0 BiobaseEnsembl VS subsample

Subsample data from a uniform distribution so two different statuses for the same entity have the same number of samples.
heatitup-complete

1.9 0.0 BiobaseEnsembl VS heatitup-complete

Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. A layer on top of heatitup for additional functionality such as working with BAM files directly.
collapse-duplication

1.9 0.0 BiobaseEnsembl VS collapse-duplication

Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.
tex-join-bib

1.9 0.0 BiobaseEnsembl VS tex-join-bib

Compile separate tex files with the same bibliography.
normalize

1.2 0.0 BiobaseEnsembl VS normalize

normalize
pipes-ordered-zip

- - BiobaseEnsembl VS pipes-ordered-zip

merge two ordered Producers into a new Producer
heatitup

- - BiobaseEnsembl VS heatitup

Find and annotate ITDs.