BiobaseHTTP alternatives and similar packages
Based on the "Bioinformatics" category.
Alternatively, view EntrezHTTP alternatives based on common mentions on social networks and blogs.
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too-many-cells
Cluster single cells and analyze cell clade relationships with colorful visualizations. -
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elynx-seq
Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way. -
birch-beer
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more. -
hierarchical-spectral-clustering
Hierarchical spectral clustering of a graph. -
zsyntax
Automated theorem prover for a linear logic-based calculus for molecular biology. -
integreat
Integrate difference data sources and optionally perform differential integration. -
differential
Finds out whether an entity comes from different distributions (statuses). -
subsample
Subsample data from a uniform distribution so two different statuses for the same entity have the same number of samples. -
collapse-duplication
Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations. -
tex-join-bib
Compile separate tex files with the same bibliography. -
heatitup-complete
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. A layer on top of heatitup for additional functionality such as working with BAM files directly. -
pipes-ordered-zip
merge two ordered Producers into a new Producer
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README
BiobaseHTTP
BiobaseHTTP provides functions to interface the Bioinformatics REST services - Entrez Ensembl.
NCBI Entrez provides multiple different databases and eutils.
For more information on Entrez refer to: Entrez.
Information on the webservice can be found at: NCBI books.
Information on ENSEMBL genomes API can be found here: Ensembl Genomes.
If you plan to include the library in a tool, register it as explained here.
BiobaseHTTP is the successor of the deprecated EntrezHTTP library.