bioinformatics-toolkit alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view bioinformatics-toolkit alternatives based on common mentions on social networks and blogs.

• hemokit

  8.4 0.0 bioinformatics-toolkit VS hemokit

  Haskell library for the Emotiv EEG, inspired by the Emokit code

• cobot

  7.7 2.8 bioinformatics-toolkit VS cobot

  Computational biology toolkit to collaborate with researchers in constructive protein engineering
  

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• hPDB

  7.5 0.0 bioinformatics-toolkit VS hPDB

  PDB parser in Haskell
  

• cobot-io

  7.4 5.3 bioinformatics-toolkit VS cobot-io

  Biological data file formats and IO
  

• samtools

  6.8 0.0 bioinformatics-toolkit VS samtools

  [Moved to: https://github.com/ingolia/SamTools]

• RNAlien

  6.4 0.0 bioinformatics-toolkit VS RNAlien

  RNAlien - unsupervised RNA family model construction

• Genbank

  5.3 2.2 bioinformatics-toolkit VS Genbank

  Genbank format tools and parser

• phybin

  5.0 0.0 bioinformatics-toolkit VS phybin

  Binning (Newick) Phylogenetic Trees by Topology

• vcf

  5.0 0.0 bioinformatics-toolkit VS vcf

  Haskell library to handle VCF (Variant Call Format) files

• cobot-tools

  5.0 3.6 bioinformatics-toolkit VS cobot-tools

  Biological data file formats and IO

• BlastHTTP

  5.0 0.0 bioinformatics-toolkit VS BlastHTTP

  Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

• cmv

  4.8 0.0 bioinformatics-toolkit VS cmv

  Visualize HMMs, CMs and their comparisons

• FormalGrammars

  4.6 0.0 bioinformatics-toolkit VS FormalGrammars

  Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

• EntrezHTTP

  4.6 0.0 bioinformatics-toolkit VS EntrezHTTP

  Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

• TaxonomyTools

  4.3 0.0 bioinformatics-toolkit VS TaxonomyTools

  Tools to process and visualize NCBI taxonomy data

• SelectSequencesFromMSA

  4.1 0.0 bioinformatics-toolkit VS SelectSequencesFromMSA

  Tool to select representative sequences from a multiple sequence alignment

• Taxonomy

  3.2 0.0 bioinformatics-toolkit VS Taxonomy

  Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

• ClustalParser

  3.0 0.0 bioinformatics-toolkit VS ClustalParser

  Parse output of Clustal tools

• seqloc

  3.0 0.0 bioinformatics-toolkit VS seqloc

  Bio.SeqLoc

• memexml

  2.7 0.0 bioinformatics-toolkit VS memexml

  Haskell cabal libary for parsing Meme motif finder xml output

• StockholmAlignment

  2.6 0.0 bioinformatics-toolkit VS StockholmAlignment

  Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.

• BioHMM

  2.6 0.0 bioinformatics-toolkit VS BioHMM

  Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.

• ViennaRNAParser

  2.6 0.0 bioinformatics-toolkit VS ViennaRNAParser

  Libary for parsing ViennaRNA package output

• uniprot-kb

  2.3 0.0 bioinformatics-toolkit VS uniprot-kb

  UniProt-KB format parser
  

• Forestry

  2.3 0.0 bioinformatics-toolkit VS Forestry

  Science and craft of forests

• Gene-CluEDO

  1.2 0.0 bioinformatics-toolkit VS Gene-CluEDO

  Gene Cluster Evolution Determined Order

• ADPfusionForest

  1.1 0.0 bioinformatics-toolkit VS ADPfusionForest

  Dynamic programming on tree and forest structures

• MutationOrder

  0.9 0.0 bioinformatics-toolkit VS MutationOrder

  most likely order of mutation events in RNA

• rank-product

  0.9 0.0 bioinformatics-toolkit VS rank-product

  Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.

• mmtf

  0.9 0.0 bioinformatics-toolkit VS mmtf

  MMTF for Haskell

• bio-sequence

  - - bioinformatics-toolkit VS bio-sequence

  Initial project template from stack

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Popular Comparisons

• bioinformatics-toolkit
  vs
  Genbank
• bioinformatics-toolkit
  vs
  ViennaRNAParser
• memexml
  vs
  ADPfusionForest
• MutationOrder
  vs
  ClustalParser
• memexml
  vs
  TaxonomyTools

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