A collection of bioinformatics tools

bioinformatics-toolkit alternatives and similar packages

Based on the "Bioinformatics" category

• hemokit

  8.3 0.0 bioinformatics-toolkit VS hemokit

  Haskell port of the Emokit EEG project

• hPDB

  6.8 0.7 bioinformatics-toolkit VS hPDB

  Protein Databank file format library

• samtools

  6.6 0.0 bioinformatics-toolkit VS samtools

  Binding to the C samtools library

• RNAlien

  5.7 7.4 bioinformatics-toolkit VS RNAlien

  Unsupervized construction of RNA family models

• phybin

  4.8 3.1 bioinformatics-toolkit VS phybin

  ...

• EntrezHTTP

  4.6 3.6 bioinformatics-toolkit VS EntrezHTTP

  Libary to interface with the NCBI Entrez REST service.

• vcf

  4.3 1.3 bioinformatics-toolkit VS vcf

  A package to parse VCF files inspired in similar python libraries

• Genbank

  4.3 0.0 bioinformatics-toolkit VS Genbank

  Libary for processing the NCBI genbank format

• BlastHTTP

  4.1 2.4 bioinformatics-toolkit VS BlastHTTP

  Libary to interface with the NCBI blast REST interface

• cmv

  3.8 0.0 bioinformatics-toolkit VS cmv

  Detailed visualization of CMs, HMMs and their comparisions

• FormalGrammars

  3.5 0.0 bioinformatics-toolkit VS FormalGrammars

  (Context-free) grammars in formal language theory

• SelectSequencesFromMSA

  3.2 2.4 bioinformatics-toolkit VS SelectSequencesFromMSA

  ...

• TaxonomyTools

  2.5 3.7 bioinformatics-toolkit VS TaxonomyTools

  Tool for parsing, processing, comparing and visualizing taxonomy data

• seqloc

  2.1 0.0 bioinformatics-toolkit VS seqloc

  Handle sequence locations for bioinformatics

• Taxonomy

  2.1 0.0 bioinformatics-toolkit VS Taxonomy

  Libary for parsing, processing and vizualization of taxonomy data

• mmtf

  1.8 4.0 bioinformatics-toolkit VS mmtf

  Macromolecular Transmission Format implementation

• BioHMM

  1.8 0.0 bioinformatics-toolkit VS BioHMM

  Libary for Hidden Markov Models in HMMER3 format.

• ClustalParser

  1.8 0.0 bioinformatics-toolkit VS ClustalParser

  Libary for parsing Clustal tools output

• ViennaRNAParser

  1.3 0.0 bioinformatics-toolkit VS ViennaRNAParser

  Libary for parsing ViennaRNA package output

• memexml

  1.3 0.0 bioinformatics-toolkit VS memexml

  Library for reading Meme XML output

• StockholmAlignment

  1.3 0.0 bioinformatics-toolkit VS StockholmAlignment

  Libary for Stockholm aligmnent format

• Forestry

  1.1 0.0 bioinformatics-toolkit VS Forestry

  Comparison of trees and forests.

• Gene-CluEDO

  1.1 0.0 bioinformatics-toolkit VS Gene-CluEDO

  Hox gene clustering

• ADPfusionForest

  1.1 0.0 bioinformatics-toolkit VS ADPfusionForest

  Dynamic programming on tree and forest structures

• rank-product

  0.8 0.9 bioinformatics-toolkit VS rank-product

  Find the rank product of a data set.

• MutationOrder

  0.8 0.0 bioinformatics-toolkit VS MutationOrder

  Most likely order of mutation events in RNA

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Popular Comparisons

• bioinformatics-toolkit
  vs
  ViennaRNAParser
• MutationOrder
  vs
  Gene-CluEDO
• MutationOrder
  vs
  TaxonomyTools
• memexml
  vs
  Gene-CluEDO
• ClustalParser
  vs
  memexml

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