BlastHTTP alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view BlastHTTP alternatives based on common mentions on social networks and blogs.

hemokit

8.4 0.0 BlastHTTP VS hemokit

Haskell library for the Emotiv EEG, inspired by the Emokit code
cobot

7.7 0.0 BlastHTTP VS cobot

Computational biology toolkit to collaborate with researchers in constructive protein engineering

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cobot-io

7.3 0.0 BlastHTTP VS cobot-io

Biological data file formats and IO
hPDB

7.2 0.0 BlastHTTP VS hPDB

PDB parser in Haskell
samtools

6.8 0.0 BlastHTTP VS samtools

[Moved to: https://github.com/ingolia/SamTools]
RNAlien

6.6 0.0 BlastHTTP VS RNAlien

RNAlien - unsupervised RNA family model construction
Genbank

5.6 0.0 BlastHTTP VS Genbank

Genbank format tools and parser
bioinformatics-toolkit

5.4 0.0 BlastHTTP VS bioinformatics-toolkit

A collection of bioinformatics algorithms
cmv

5.3 0.0 BlastHTTP VS cmv

Visualize HMMs, CMs and their comparisons
phybin

5.2 0.0 BlastHTTP VS phybin

Binning (Newick) Phylogenetic Trees by Topology
FormalGrammars

5.1 0.0 BlastHTTP VS FormalGrammars

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)
EntrezHTTP

5.1 0.0 BlastHTTP VS EntrezHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
cobot-tools

5.0 3.6 BlastHTTP VS cobot-tools

Biological data file formats and IO
vcf

5.0 0.0 BlastHTTP VS vcf

Haskell library to handle VCF (Variant Call Format) files
TaxonomyTools

4.3 0.0 BlastHTTP VS TaxonomyTools

Tools to process and visualize NCBI taxonomy data
Taxonomy

4.1 0.0 BlastHTTP VS Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
SelectSequencesFromMSA

4.0 0.0 BlastHTTP VS SelectSequencesFromMSA

Tool to select representative sequences from a multiple sequence alignment
ViennaRNAParser

3.6 0.0 BlastHTTP VS ViennaRNAParser

Libary for parsing ViennaRNA package output
ClustalParser

3.1 0.0 BlastHTTP VS ClustalParser

Parse output of Clustal tools
BioHMM

2.9 0.0 BlastHTTP VS BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.
memexml

2.9 0.0 BlastHTTP VS memexml

Haskell cabal libary for parsing Meme motif finder xml output
StockholmAlignment

2.8 0.0 BlastHTTP VS StockholmAlignment

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.
seqloc

2.4 0.0 BlastHTTP VS seqloc

Bio.SeqLoc
Forestry

2.4 0.0 BlastHTTP VS Forestry

Science and craft of forests
Gene-CluEDO

2.2 0.0 BlastHTTP VS Gene-CluEDO

Gene Cluster Evolution Determined Order
ADPfusionForest

2.1 0.0 BlastHTTP VS ADPfusionForest

Dynamic programming on tree and forest structures
MutationOrder

1.8 0.0 BlastHTTP VS MutationOrder

most likely order of mutation events in RNA
uniprot-kb

1.5 0.0 BlastHTTP VS uniprot-kb

UniProt-KB format parser
rank-product

1.1 0.0 BlastHTTP VS rank-product

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
mmtf

0.6 0.0 BlastHTTP VS mmtf

MMTF for Haskell
bio-sequence

- - BlastHTTP VS bio-sequence

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README

BlastHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

Changes:

Version 1.2.0:

Added experimental support for the european bioinformatics institute blast REST interface Added support for multiple sequences in one request

Version 1.0.0:

Added optionalArgument parameter to BlastHTTP datatype and removed EntrezQuery. This has the advantage that any additional argument can be supplied, not only EntrezQuery strings.

Version 0.0.1:

Initial Version