Haskell Specific Industries Bioinformatics

A collection of bioinformatics algorithms

Biological data file formats and IO

DISCONTINUED. Biological data file formats and IO

RNAlien - unsupervised RNA family model construction

Computational biology toolkit to collaborate with researchers in constructive protein engineering

Genbank format tools and parser

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.

Binning (Newick) Phylogenetic Trees by Topology

PDB parser in Haskell

Haskell library for the Emotiv EEG, inspired by the Emokit code

MMTF for Haskell

Tool to select representative sequences from a multiple sequence alignment

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.

Gene Cluster Evolution Determined Order

Visualize HMMs, CMs and their comparisons

Haskell library to handle VCF (Variant Call Format) files

Dynamic programming on tree and forest structures

Science and craft of forests

UniProt-KB format parser

Libary for parsing ViennaRNA package output

Tools to process and visualize NCBI taxonomy data

Bio.SeqLoc

DISCONTINUED. [Moved to: https://github.com/ingolia/SamTools]

Haskell cabal libary for parsing Meme motif finder xml output

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

Parse output of Clustal tools

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

most likely order of mutation events in RNA

DISCONTINUED. Initial project template from stack