EntrezHTTP alternatives and similar packages
Based on the "Bioinformatics" category.
Alternatively, view EntrezHTTP alternatives based on common mentions on social networks and blogs.
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cobot
Computational biology toolkit to collaborate with researchers in constructive protein engineering -
BlastHTTP
Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice -
Taxonomy
Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources. -
BioHMM
Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format. -
StockholmAlignment
Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format. -
rank-product
Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
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README
BiobaseHTTP
BiobaseHTTP provides functions to interface the Bioinformatics REST services - Entrez Ensembl.
NCBI Entrez provides multiple different databases and eutils.
For more information on Entrez refer to: Entrez.
Information on the webservice can be found at: NCBI books.
Information on ENSEMBL genomes API can be found here: Ensembl Genomes.
If you plan to include the library in a tool, register it as explained here.
BiobaseHTTP is the successor of the deprecated EntrezHTTP library.