fasta alternatives and similar packages
Based on the "Data" category.
Alternatively, view fasta alternatives based on common mentions on social networks and blogs.
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semantic-source
Parsing, analyzing, and comparing source code across many languages -
lens
Lenses, Folds, and Traversals - Join us on web.libera.chat #haskell-lens -
code-builder
Packages for defining APIs, running them, generating client code and documentation. -
text
Haskell library for space- and time-efficient operations over Unicode text. -
cassava
A CSV parsing and encoding library optimized for ease of use and high performance -
compendium-client
Mu (μ) is a purely functional framework for building micro services. -
holmes
A reference library for constraint-solving with propagators and CDCL. -
resource-pool
A high-performance striped resource pooling implementation for Haskell -
primitive
This package provides various primitive memory-related operations. -
discrimination
Fast linear time sorting and discrimination for a large class of data types -
IORefCAS
A collection of different packages for CAS based data structures. -
dependent-sum
Dependent sums and supporting typeclasses for comparing and displaying them -
reflection
Reifies arbitrary Haskell terms into types that can be reflected back into terms -
dependent-map
Dependently-typed finite maps (partial dependent products) -
orgmode-parse
Attoparsec parser combinators for parsing org-mode structured text! -
scientific
Arbitrary-precision floating-point numbers represented using scientific notation -
streaming
An optimized general monad transformer for streaming applications, with a simple prelude of functions -
text-icu
This package provides the Haskell Data.Text.ICU library, for performing complex manipulation of Unicode text.
InfluxDB - Power Real-Time Data Analytics at Scale
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README
fasta
Gregory W. Schwartz
Defines the Fasta type and some parsing and translation associated with it. The motivation for this library was to make a general use fasta library making no assumptions about the data comprised of many language types as possible for String, Text, ByteString, and all laziness inbetween, as there was a lack of choice in this regard. Futhermore, the streaming capabilities of pipes allows for much needed efficiency improvements.
While you can use the parseFasta
function, it is highly recommended to instead use pipes with pipesFasta
as the former function is slower and uses up much more memory due to lookaheads. An example of the pipesFasta
usage can be seen in the diversity
executable package located at https://github.com/GregorySchwartz/diversity/blob/master/src/src-exec/Main.hs in the pipesPositionMap
function.
To install:
stack install fasta