Forestry alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view Forestry alternatives based on common mentions on social networks and blogs.

hemokit

8.4 0.0 Forestry VS hemokit

Haskell library for the Emotiv EEG, inspired by the Emokit code
cobot

7.8 0.0 Forestry VS cobot

Computational biology toolkit to collaborate with researchers in constructive protein engineering

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hPDB

7.4 0.0 Forestry VS hPDB

PDB parser in Haskell
cobot-io

7.4 3.6 Forestry VS cobot-io

Biological data file formats and IO
samtools

6.8 0.0 Forestry VS samtools

[Moved to: https://github.com/ingolia/SamTools]
RNAlien

6.6 0.0 Forestry VS RNAlien

RNAlien - unsupervised RNA family model construction
bioinformatics-toolkit

5.9 0.0 Forestry VS bioinformatics-toolkit

A collection of bioinformatics algorithms
Genbank

5.5 0.0 Forestry VS Genbank

Genbank format tools and parser
BlastHTTP

5.3 0.0 Forestry VS BlastHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
vcf

5.2 0.0 Forestry VS vcf

Haskell library to handle VCF (Variant Call Format) files
cmv

5.2 0.0 Forestry VS cmv

Visualize HMMs, CMs and their comparisons
cobot-tools

5.0 3.6 Forestry VS cobot-tools

Biological data file formats and IO
EntrezHTTP

4.9 0.0 Forestry VS EntrezHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
FormalGrammars

4.9 0.0 Forestry VS FormalGrammars

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)
phybin

4.7 0.0 Forestry VS phybin

Binning (Newick) Phylogenetic Trees by Topology
SelectSequencesFromMSA

4.3 0.0 Forestry VS SelectSequencesFromMSA

Tool to select representative sequences from a multiple sequence alignment
TaxonomyTools

4.0 0.0 Forestry VS TaxonomyTools

Tools to process and visualize NCBI taxonomy data
Taxonomy

3.8 0.0 Forestry VS Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
ClustalParser

3.5 0.0 Forestry VS ClustalParser

Parse output of Clustal tools
ViennaRNAParser

3.3 0.0 Forestry VS ViennaRNAParser

Libary for parsing ViennaRNA package output
StockholmAlignment

3.2 0.0 Forestry VS StockholmAlignment

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.
BioHMM

3.2 0.0 Forestry VS BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.
memexml

3.2 0.0 Forestry VS memexml

Haskell cabal libary for parsing Meme motif finder xml output
seqloc

2.6 0.0 Forestry VS seqloc

Bio.SeqLoc
uniprot-kb

1.9 0.0 Forestry VS uniprot-kb

UniProt-KB format parser
ADPfusionForest

1.7 0.0 Forestry VS ADPfusionForest

Dynamic programming on tree and forest structures
Gene-CluEDO

1.7 0.0 Forestry VS Gene-CluEDO

Gene Cluster Evolution Determined Order
MutationOrder

1.4 0.0 Forestry VS MutationOrder

most likely order of mutation events in RNA
rank-product

1.3 0.0 Forestry VS rank-product

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
mmtf

0.7 0.0 Forestry VS mmtf

MMTF for Haskell
bio-sequence

- - Forestry VS bio-sequence

Initial project template from stack

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README

Forestry: Science and craft of forests

This library provides linear and affine tree alignment algorithms. In addition, a very simple program @[email protected] is provided. This program mimics @[email protected]

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
[email protected]
http://www.bioinf.uni-leipzig.de/~choener/