mmtf alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view mmtf alternatives based on common mentions on social networks and blogs.

hemokit

8.4 0.0 mmtf VS hemokit

Haskell library for the Emotiv EEG, inspired by the Emokit code
cobot

7.8 0.0 mmtf VS cobot

Computational biology toolkit to collaborate with researchers in constructive protein engineering

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cobot-io

7.4 0.0 mmtf VS cobot-io

Biological data file formats and IO
hPDB

7.3 0.0 mmtf VS hPDB

PDB parser in Haskell
samtools

6.8 0.0 mmtf VS samtools

[Moved to: https://github.com/ingolia/SamTools]
RNAlien

6.6 0.0 mmtf VS RNAlien

RNAlien - unsupervised RNA family model construction
bioinformatics-toolkit

5.8 0.0 mmtf VS bioinformatics-toolkit

A collection of bioinformatics algorithms
Genbank

5.5 0.0 mmtf VS Genbank

Genbank format tools and parser
vcf

5.2 0.0 mmtf VS vcf

Haskell library to handle VCF (Variant Call Format) files
BlastHTTP

5.1 0.0 mmtf VS BlastHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
cobot-tools

5.0 3.6 mmtf VS cobot-tools

Biological data file formats and IO
cmv

5.0 0.0 mmtf VS cmv

Visualize HMMs, CMs and their comparisons
EntrezHTTP

4.9 0.0 mmtf VS EntrezHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
FormalGrammars

4.8 0.0 mmtf VS FormalGrammars

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)
phybin

4.6 0.0 mmtf VS phybin

Binning (Newick) Phylogenetic Trees by Topology
SelectSequencesFromMSA

4.2 0.0 mmtf VS SelectSequencesFromMSA

Tool to select representative sequences from a multiple sequence alignment
TaxonomyTools

3.9 0.0 mmtf VS TaxonomyTools

Tools to process and visualize NCBI taxonomy data
Taxonomy

3.6 0.0 mmtf VS Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
ClustalParser

3.4 0.0 mmtf VS ClustalParser

Parse output of Clustal tools
ViennaRNAParser

3.1 0.0 mmtf VS ViennaRNAParser

Libary for parsing ViennaRNA package output
BioHMM

3.1 0.0 mmtf VS BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.
StockholmAlignment

3.1 0.0 mmtf VS StockholmAlignment

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.
memexml

3.1 0.0 mmtf VS memexml

Haskell cabal libary for parsing Meme motif finder xml output
seqloc

2.5 0.0 mmtf VS seqloc

Bio.SeqLoc
uniprot-kb

1.8 0.0 mmtf VS uniprot-kb

UniProt-KB format parser
Forestry

1.8 0.0 mmtf VS Forestry

Science and craft of forests
ADPfusionForest

1.5 0.0 mmtf VS ADPfusionForest

Dynamic programming on tree and forest structures
Gene-CluEDO

1.5 0.0 mmtf VS Gene-CluEDO

Gene Cluster Evolution Determined Order
rank-product

1.3 0.0 mmtf VS rank-product

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
MutationOrder

1.2 0.0 mmtf VS MutationOrder

most likely order of mutation events in RNA
bio-sequence

- - mmtf VS bio-sequence

Initial project template from stack