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Bioinformatics packages

Showing projects tagged as Specific Industries and Bioinformatics

  • hemokit

    8.3 0.0 Haskell
    Haskell library for the Emotiv EEG, inspired by the Emokit code

  • hPDB

    7.2 0.0 Haskell
    PDB parser in Haskell

  • samtools

    6.8 0.0 C
    DISCONTINUED. [Moved to: https://github.com/ingolia/SamTools]

  • RNAlien

    6.5 0.0 Haskell
    RNAlien - unsupervised RNA family model construction

  • phybin

    5.9 0.0 Haskell
    Binning (Newick) Phylogenetic Trees by Topology

  • bioinformatics-toolkit

    5.7 0.0 Haskell
    A collection of bioinformatics algorithms

  • Genbank

    5.5 0.0 Haskell
    Genbank format tools and parser

  • cmv

    5.3 0.0 Haskell
    Visualize HMMs, CMs and their comparisons

  • BlastHTTP

    5.3 0.0 Haskell
    Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

  • vcf

    5.3 0.0 Haskell
    Haskell library to handle VCF (Variant Call Format) files

  • FormalGrammars

    5.1 0.0 Haskell
    Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

  • EntrezHTTP

    4.9 0.0 Haskell
    Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

  • SelectSequencesFromMSA

    4.3 0.0 Haskell
    Tool to select representative sequences from a multiple sequence alignment

  • TaxonomyTools

    4.1 0.0 Haskell
    Tools to process and visualize NCBI taxonomy data

  • Taxonomy

    3.8 0.0 Haskell
    Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

  • ClustalParser

    3.6 0.0 Haskell
    Parse output of Clustal tools

  • StockholmAlignment

    3.3 0.0 Haskell
    Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.

  • memexml

    3.3 0.0 Haskell
    Haskell cabal libary for parsing Meme motif finder xml output

  • ViennaRNAParser

    3.3 0.0 Haskell
    Libary for parsing ViennaRNA package output

  • BioHMM

    3.3 0.0 Haskell
    Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.

  • Forestry

    2.1 0.0 Haskell
    Science and craft of forests

  • Gene-CluEDO

    1.9 0.0 Haskell
    Gene Cluster Evolution Determined Order

  • ADPfusionForest

    1.9 0.0 Haskell
    Dynamic programming on tree and forest structures

  • seqloc

    1.9 0.0 Haskell
    Bio.SeqLoc

  • rank-product

    1.6 0.0 Haskell
    Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.

  • MutationOrder

    1.6 0.0 Haskell
    most likely order of mutation events in RNA

  • mmtf

    0.6 0.0 Haskell
    MMTF for Haskell