bioinformatics-toolkit alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view bioinformatics-toolkit alternatives based on common mentions on social networks and blogs.

hemokit

8.4 0.0 bioinformatics-toolkit VS hemokit

Haskell library for the Emotiv EEG, inspired by the Emokit code
cobot

7.7 1.8 bioinformatics-toolkit VS cobot

Computational biology toolkit to collaborate with researchers in constructive protein engineering

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cobot-io

7.4 5.1 bioinformatics-toolkit VS cobot-io

Biological data file formats and IO
hPDB

7.2 0.0 bioinformatics-toolkit VS hPDB

PDB parser in Haskell
samtools

6.8 0.0 bioinformatics-toolkit VS samtools

[Moved to: https://github.com/ingolia/SamTools]
RNAlien

6.6 0.0 bioinformatics-toolkit VS RNAlien

RNAlien - unsupervised RNA family model construction
phybin

5.8 0.0 bioinformatics-toolkit VS phybin

Binning (Newick) Phylogenetic Trees by Topology
Genbank

5.6 0.0 bioinformatics-toolkit VS Genbank

Genbank format tools and parser
vcf

5.3 0.0 bioinformatics-toolkit VS vcf

Haskell library to handle VCF (Variant Call Format) files
cmv

5.3 0.0 bioinformatics-toolkit VS cmv

Visualize HMMs, CMs and their comparisons
BlastHTTP

5.3 0.0 bioinformatics-toolkit VS BlastHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
FormalGrammars

5.1 0.0 bioinformatics-toolkit VS FormalGrammars

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)
EntrezHTTP

5.0 0.0 bioinformatics-toolkit VS EntrezHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
cobot-tools

5.0 3.6 bioinformatics-toolkit VS cobot-tools

Biological data file formats and IO
SelectSequencesFromMSA

4.4 0.0 bioinformatics-toolkit VS SelectSequencesFromMSA

Tool to select representative sequences from a multiple sequence alignment
TaxonomyTools

4.1 0.0 bioinformatics-toolkit VS TaxonomyTools

Tools to process and visualize NCBI taxonomy data
Taxonomy

3.9 0.0 bioinformatics-toolkit VS Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
ClustalParser

3.6 0.0 bioinformatics-toolkit VS ClustalParser

Parse output of Clustal tools
BioHMM

3.4 0.0 bioinformatics-toolkit VS BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.
ViennaRNAParser

3.4 0.0 bioinformatics-toolkit VS ViennaRNAParser

Libary for parsing ViennaRNA package output
StockholmAlignment

3.4 0.0 bioinformatics-toolkit VS StockholmAlignment

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.
memexml

3.4 0.0 bioinformatics-toolkit VS memexml

Haskell cabal libary for parsing Meme motif finder xml output
Forestry

2.2 0.0 bioinformatics-toolkit VS Forestry

Science and craft of forests
Gene-CluEDO

1.9 0.0 bioinformatics-toolkit VS Gene-CluEDO

Gene Cluster Evolution Determined Order
seqloc

1.9 0.0 bioinformatics-toolkit VS seqloc

Bio.SeqLoc
ADPfusionForest

1.9 0.0 bioinformatics-toolkit VS ADPfusionForest

Dynamic programming on tree and forest structures
MutationOrder

1.7 0.0 bioinformatics-toolkit VS MutationOrder

most likely order of mutation events in RNA
rank-product

1.6 0.0 bioinformatics-toolkit VS rank-product

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
uniprot-kb

1.3 0.0 bioinformatics-toolkit VS uniprot-kb

UniProt-KB format parser
mmtf

0.6 0.0 bioinformatics-toolkit VS mmtf

MMTF for Haskell
bio-sequence

- - bioinformatics-toolkit VS bio-sequence

Initial project template from stack