SelectSequencesFromMSA alternatives and similar packages
Based on the "Bioinformatics" category
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SelectSequences is a tool for selection of a represenative subset of sequences from a multiple sequence alignment in clustal format. It is inspired the SelectSequences.pl script provided by RNAz.
It is available as a commandline tool only.
Installation via bioconda
SelectSequences can be installed with all dependencies via conda. Once you have conda installed simply type:
conda install -c bioconda selectsequences
Available as docker container
docker pull quay.io/biocontainers/selectsequences:1.0.0--pl5.22.0_0 docker run -i -t quay.io/biocontainers/selectsequences:1.0.0--pl5.22.0_0 bash
Installation via cabal-install
SelectSequences is implemented in Haskell and can be installed via the Haskell package distribution sytem cabal. Once you have cabal installed simply type:
cabal install SelectSequences
### Precompiled Executables
* Archlinux (ghc-8.0.1) [SelectSequences 1.0.0 x86_64](http://www.bioinf.uni-freiburg.de//~egg/SelectSequences/archlinux-ghc8.0.1/SelectSequences-1.0.0)