All Versions
30
Latest Version
Avg Release Cycle
63 days
Latest Release
1574 days ago

Changelog History
Page 3

  • v1.2.4 Changes

    October 01, 2016 
    * Support for GHC-8.0.1

  • v1.2.3 Changes

    October 01, 2016 
    * Added cmsearch output to BED12 converter for genome browser integration
* Updated dependency versions and version number output

  • v1.2.2 Changes

    June 01, 2016 
    * Fixed a bug building RNAcentral query and improved formatting of
corresponding output

  • v1.2.1 Changes

    May 01, 2016 
    * Added RNAcentralRequest utility
* Fixed a bug in parsing RNAcentral response headers

  • v1.2.0 Changes

    May 01, 2016 
    * Added cmsearchToBED utility

  • v1.1.3 Changes

    April 01, 2016 
    * Fixed wrong description for softmasking commandline switch
* Fixed encoding tabular iteration progress output

  • v1.1.2 Changes

    April 01, 2016 
    * Fixed a bug in passing softmasking to blast
* Performance improvements in query selection

  • v1.1.1 Changes

    March 01, 2016 
    * Added a commandlineswitch for softmasking
* Improved interface with Alienserver

  • v1.1.0 Changes

    February 01, 2016 
    * Update including changes from 1st review
* Cmbuild uses --refine option
* Evaluation now includes RNAcode result, which is a new dependecy
* RNAcentral lookup for found sequences via REST interface during evaluation
* Added a new alternative query selection method that filters for entries max. pairwise identity
* Added softmasking to blastrequests
* Paralog sequences are now included by default
* Installation of RNAlien is now available via stackage
* Fix several bugs including blasthit coverage filter
* RNAlienStatistics can now parse cmsearch results from multiple cm files as for clans
* RNAlienStatistics includes a switch for using bitscore or evalue cutoffs

  • v1.0.0 Changes

    October 01, 2015 
    * Initial version