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19 Bioinformatics packages and projects

  • too-many-cells

    8.5 5.3 Haskell
    Cluster single cells and analyze cell clade relationships with colorful visualizations.
  • hyraxAbif

    6.4 0.4 Haskell
    ABIF parser, writer and generator
  • Scout APM uses tracing logic that ties bottlenecks to source code so you know the exact line of code causing performance issues and can get back to building a great product faster.
    Sponsored scoutapm.com
  • BiobaseHTTP

    4.8 0.0 Haskell
    Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
  • birch-beer

    4.3 1.6 Haskell
    Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.
  • hierarchical-spectral-clustering

    4.1 0.0 Haskell
    Hierarchical spectral clustering of a graph.
  • zsyntax

    3.7 0.0 Haskell
    Automated theorem prover for a linear logic-based calculus for molecular biology.
  • BiobaseEnsembl

    2.5 0.0 Haskell
    Ensembl related functions and datastructures
  • differential

    2.2 0.6 Haskell
    Finds out whether an entity comes from different distributions (statuses).
  • modularity

    2.2 0.0 Haskell
    Find the modularity of a network.
  • integreat

    2.2 0.0 Haskell
    Integrate difference data sources and optionally perform differential integration.
  • elynx-seq

    1.8 7.5 Haskell
    Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.
  • tex-join-bib

    1.0 0.0 Haskell
    Compile separate tex files with the same bibliography.
  • collapse-duplication

    1.0 0.0 Haskell
    Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.
  • heatitup-complete

    1.0 0.0 Haskell
    Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. A layer on top of heatitup for additional functionality such as working with BAM files directly.
  • normalize

    1.0 0.0 Haskell
    normalize
  • subsample

    1.0 0.0 Haskell
    Subsample data from a uniform distribution so two different statuses for the same entity have the same number of samples.
  • ViennaRNA-extras

    1.0 0.0 Haskell
    ViennaRNA v2 extensions in Haskell
  • heatitup

    - -
    Find and annotate ITDs.
  • pipes-ordered-zip

    - -
    merge two ordered Producers into a new Producer

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