integreat alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view integreat alternatives based on common mentions on social networks and blogs.

• too-many-cells

  9.1 3.6 integreat VS too-many-cells

  Cluster single cells and analyze cell clade relationships with colorful visualizations.

• hyraxAbif

  6.3 0.0 integreat VS hyraxAbif

  DISCONTINUED. ABIF parser, writer and generator
  

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• BiobaseHTTP

  4.9 0.0 integreat VS BiobaseHTTP

  Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

• hierarchical-spectral-clustering

  4.8 0.0 integreat VS hierarchical-spectral-clustering

  Hierarchical spectral clustering of a graph.

• elynx-seq

  4.7 5.1 integreat VS elynx-seq

  Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.

• birch-beer

  4.3 0.0 integreat VS birch-beer

  Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.

• zsyntax

  3.8 6.6 integreat VS zsyntax

  Automated theorem prover for a linear logic-based calculus for molecular biology.

• modularity

  3.3 0.0 integreat VS modularity

  Find the modularity of a network.

• BiobaseEnsembl

  3.1 0.0 integreat VS BiobaseEnsembl

  Ensembl related functions and datastructures

• differential

  2.8 0.0 integreat VS differential

  Finds out whether an entity comes from different distributions (statuses).

• ViennaRNA-extras

  1.9 0.0 integreat VS ViennaRNA-extras

  ViennaRNA v2 extensions in Haskell

• subsample

  1.6 0.0 integreat VS subsample

  Subsample data from a uniform distribution so two different statuses for the same entity have the same number of samples.

• normalize

  1.6 0.0 integreat VS normalize

  normalize

• collapse-duplication

  1.6 0.0 integreat VS collapse-duplication

  Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.

• tex-join-bib

  1.6 0.0 integreat VS tex-join-bib

  Compile separate tex files with the same bibliography.

• heatitup-complete

  1.6 0.0 integreat VS heatitup-complete

  Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. A layer on top of heatitup for additional functionality such as working with BAM files directly.

• pipes-ordered-zip

  - - integreat VS pipes-ordered-zip

  DISCONTINUED. merge two ordered Producers into a new Producer

• heatitup

  - - integreat VS heatitup

  DISCONTINUED. Find and annotate ITDs.

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Popular Comparisons

• normalize
  vs
  collapse-duplication