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Bioinformatics packages

Showing projects tagged as Bioinformatics

  • hemokit

    8.3 0.0 Haskell
    Haskell port of the Emokit EEG project
  • hPDB

    7.1 4.4 Haskell
    Protein Databank file format library
  • samtools

    6.5 0.0 C
    Binding to the C samtools library
  • ADPfusion

    6.3 0.0 Haskell
    Efficient, high-level dynamic programming.
  • RNAlien

    5.6 0.0 Haskell
    Unsupervized construction of RNA family models
  • phybin

    4.9 3.7 Haskell
    ...
  • EntrezHTTP

    4.7 4.9 Haskell
    Libary to interface with the NCBI Entrez REST service.
  • bioinformatics-toolkit

    4.7 4.8 Haskell
    A collection of bioinformatics tools
  • Genbank

    4.5 0.0 Haskell
    Libary for processing the NCBI genbank format
  • vcf

    4.5 1.0 Haskell
    A package to parse VCF files inspired in similar python libraries
  • BlastHTTP

    4.1 2.4 Haskell
    Libary to interface with the NCBI blast REST interface
  • cmv

    4.0 0.0 Haskell
    Detailed visualization of CMs, HMMs and their comparisions
  • SelectSequencesFromMSA

    3.4 3.5 Haskell
    ...
  • FormalGrammars

    3.4 0.0 Haskell
    (Context-free) grammars in formal language theory
  • adp-multi

    2.2 0.0 Haskell
    ADP for multiple context-free languages
  • TaxonomyTools

    2.2 0.0 Haskell
    Tool for parsing, processing, comparing and visualizing taxonomy data
  • Taxonomy

    2.2 0.0 Haskell
    Libary for parsing, processing and vizualization of taxonomy data
  • mmtf

    1.8 5.1 Haskell
    Macromolecular Transmission Format implementation
  • ClustalParser

    1.8 1.2 Haskell
    Libary for parsing Clustal tools output
  • BioHMM

    1.8 0.0 Haskell
    Libary for Hidden Markov Models in HMMER3 format.
  • seqloc

    1.8 0.0 Haskell
    Handle sequence locations for bioinformatics
  • memexml

    1.3 0.0 Haskell
    Library for reading Meme XML output
  • StockholmAlignment

    1.3 0.0 Haskell
    Libary for Stockholm aligmnent format
  • ViennaRNAParser

    1.3 0.0 Haskell
    Libary for parsing ViennaRNA package output
  • Forestry

    1.1 0.0 Haskell
    Comparison of trees and forests.
  • ADPfusionForest

    1.1 0.0 Haskell
    Dynamic programming on tree and forest structures
  • Gene-CluEDO

    1.1 0.0 Haskell
    Hox gene clustering
  • ADPfusionSet

    1.1 0.0 Haskell
    Dynamic programming for Set data structures.
  • MutationOrder

    0.8 0.0 Haskell
    Most likely order of mutation events in RNA
  • ViennaRNA-extras

    0.8 0.0 Haskell
    ViennaRNA v2 extensions