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Bioinformatics packages

Showing projects tagged as Bioinformatics

  • too-many-cells

    9.0 4.5 Haskell
    Cluster single cells and analyze cell clade relationships with colorful visualizations.

  • hemokit

    8.4 0.0 Haskell
    Haskell library for the Emotiv EEG, inspired by the Emokit code

  • cobot

    7.7 1.8 Haskell
    Computational biology toolkit to collaborate with researchers in constructive protein engineering

  • cobot-io

    7.4 5.1 Haskell
    Biological data file formats and IO

  • ADPfusion

    7.4 5.1 Haskell
    Efficient, high-level dynamic programming

  • hPDB

    7.2 0.0 Haskell
    PDB parser in Haskell

  • samtools

    6.8 0.0 C
    DISCONTINUED. [Moved to: https://github.com/ingolia/SamTools]

  • RNAlien

    6.6 0.0 Haskell
    RNAlien - unsupervised RNA family model construction

  • hyraxAbif

    6.3 0.0 Haskell
    DISCONTINUED. ABIF parser, writer and generator

  • phybin

    5.8 0.0 Haskell
    Binning (Newick) Phylogenetic Trees by Topology

  • bioinformatics-toolkit

    5.7 0.0 Haskell
    A collection of bioinformatics algorithms

  • Genbank

    5.6 0.0 Haskell
    Genbank format tools and parser

  • vcf

    5.3 0.0 Haskell
    Haskell library to handle VCF (Variant Call Format) files

  • BlastHTTP

    5.3 0.0 Haskell
    Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

  • cmv

    5.3 0.0 Haskell
    Visualize HMMs, CMs and their comparisons

  • FormalGrammars

    5.1 0.0 Haskell
    Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

  • EntrezHTTP

    5.0 0.0 Haskell
    Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

  • BiobaseHTTP

    5.0 0.0 Haskell
    Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

  • cobot-tools

    5.0 3.6 Haskell
    DISCONTINUED. Biological data file formats and IO

  • elynx-seq

    4.8 4.9 Haskell
    Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.

  • hierarchical-spectral-clustering

    4.6 0.0 Haskell
    Hierarchical spectral clustering of a graph.

  • birch-beer

    4.4 0.0 Haskell
    Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.

  • SelectSequencesFromMSA

    4.4 0.0 Haskell
    Tool to select representative sequences from a multiple sequence alignment

  • TaxonomyTools

    4.1 0.0 Haskell
    Tools to process and visualize NCBI taxonomy data

  • zsyntax

    3.9 6.6 Haskell
    Automated theorem prover for a linear logic-based calculus for molecular biology.

  • Taxonomy

    3.9 0.0 Haskell
    Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

  • adp-multi

    3.7 0.0 Haskell
    Prototype of ADP for MCFL (multiple context-free languages)

  • ClustalParser

    3.6 0.0 Haskell
    Parse output of Clustal tools

  • StockholmAlignment

    3.4 0.0 Haskell
    Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.

  • ViennaRNAParser

    3.4 0.0 Haskell
    Libary for parsing ViennaRNA package output