StockholmAlignment alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view StockholmAlignment alternatives based on common mentions on social networks and blogs.

hemokit

8.4 0.0 StockholmAlignment VS hemokit

Haskell library for the Emotiv EEG, inspired by the Emokit code
cobot

7.7 1.1 StockholmAlignment VS cobot

Computational biology toolkit to collaborate with researchers in constructive protein engineering

Scout APM: A developer's best friend. Try free for 14-days

Scout APM uses tracing logic that ties bottlenecks to source code so you know the exact line of code causing performance issues and can get back to building a great product faster.

Promo scoutapm.com

cobot-io

7.5 4.2 StockholmAlignment VS cobot-io

Biological data file formats and IO
hPDB

7.5 0.0 StockholmAlignment VS hPDB

PDB parser in Haskell
samtools

6.8 0.0 StockholmAlignment VS samtools

[Moved to: https://github.com/ingolia/SamTools]
RNAlien

6.4 0.0 StockholmAlignment VS RNAlien

RNAlien - unsupervised RNA family model construction
bioinformatics-toolkit

5.6 0.0 StockholmAlignment VS bioinformatics-toolkit

A collection of bioinformatics algorithms
Genbank

5.3 2.2 StockholmAlignment VS Genbank

Genbank format tools and parser
phybin

5.0 0.0 StockholmAlignment VS phybin

Binning (Newick) Phylogenetic Trees by Topology
vcf

5.0 0.0 StockholmAlignment VS vcf

Haskell library to handle VCF (Variant Call Format) files
cobot-tools

5.0 3.6 StockholmAlignment VS cobot-tools

Biological data file formats and IO
BlastHTTP

5.0 0.0 StockholmAlignment VS BlastHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
cmv

4.8 0.0 StockholmAlignment VS cmv

Visualize HMMs, CMs and their comparisons
EntrezHTTP

4.6 0.0 StockholmAlignment VS EntrezHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
TaxonomyTools

4.3 0.0 StockholmAlignment VS TaxonomyTools

Tools to process and visualize NCBI taxonomy data
FormalGrammars

4.3 0.0 StockholmAlignment VS FormalGrammars

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)
SelectSequencesFromMSA

4.1 0.0 StockholmAlignment VS SelectSequencesFromMSA

Tool to select representative sequences from a multiple sequence alignment
Taxonomy

3.3 0.0 StockholmAlignment VS Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
seqloc

3.0 0.0 StockholmAlignment VS seqloc

Bio.SeqLoc
ClustalParser

3.0 0.0 StockholmAlignment VS ClustalParser

Parse output of Clustal tools
memexml

2.7 0.0 StockholmAlignment VS memexml

Haskell cabal libary for parsing Meme motif finder xml output
ViennaRNAParser

2.6 0.0 StockholmAlignment VS ViennaRNAParser

Libary for parsing ViennaRNA package output
BioHMM

2.6 0.0 StockholmAlignment VS BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.
uniprot-kb

2.3 0.0 StockholmAlignment VS uniprot-kb

UniProt-KB format parser
Forestry

2.3 0.0 StockholmAlignment VS Forestry

Science and craft of forests
Gene-CluEDO

1.2 0.0 StockholmAlignment VS Gene-CluEDO

Gene Cluster Evolution Determined Order
ADPfusionForest

1.1 0.0 StockholmAlignment VS ADPfusionForest

Dynamic programming on tree and forest structures
MutationOrder

0.9 0.0 StockholmAlignment VS MutationOrder

most likely order of mutation events in RNA
rank-product

0.9 0.0 StockholmAlignment VS rank-product

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
mmtf

0.9 0.0 StockholmAlignment VS mmtf

MMTF for Haskell
bio-sequence

- - StockholmAlignment VS bio-sequence

Initial project template from stack