Haskell Specific Industries Bioinformatics

Haskell library for the Emotiv EEG, inspired by the Emokit code

Computational biology toolkit to collaborate with researchers in constructive protein engineering

Biological data file formats and IO

PDB parser in Haskell

[Moved to: https://github.com/ingolia/SamTools]

RNAlien - unsupervised RNA family model construction

A collection of bioinformatics algorithms

Genbank format tools and parser

Binning (Newick) Phylogenetic Trees by Topology

Haskell library to handle VCF (Variant Call Format) files

Biological data file formats and IO

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

Visualize HMMs, CMs and their comparisons

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)

Tools to process and visualize NCBI taxonomy data

Tool to select representative sequences from a multiple sequence alignment

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

Parse output of Clustal tools

Bio.SeqLoc

Haskell cabal libary for parsing Meme motif finder xml output

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.

Libary for parsing ViennaRNA package output

UniProt-KB format parser

Science and craft of forests

Gene Cluster Evolution Determined Order

Dynamic programming on tree and forest structures

most likely order of mutation events in RNA

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.

MMTF for Haskell

Initial project template from stack