Haskell Specific Industries Bioinformatics

27 Bioinformatics packages and projects

• hemokit

  8.3 0.0 Haskell

  Haskell port of the Emokit EEG project

• hPDB

  7.1 4.4 Haskell

  Protein Databank file format library

• samtools

  6.5 0.0 C

  Binding to the C samtools library

• RNAlien

  5.6 0.0 Haskell

  Unsupervized construction of RNA family models

• phybin

  4.9 3.7 Haskell

  ...

• bioinformatics-toolkit

  4.7 4.8 Haskell

  A collection of bioinformatics tools

• EntrezHTTP

  4.7 4.9 Haskell

  Libary to interface with the NCBI Entrez REST service.

• vcf

  4.5 1.0 Haskell

  A package to parse VCF files inspired in similar python libraries

• Genbank

  4.5 0.0 Haskell

  Libary for processing the NCBI genbank format

• BlastHTTP

  4.1 2.4 Haskell

  Libary to interface with the NCBI blast REST interface

• cmv

  4.0 0.0 Haskell

  Detailed visualization of CMs, HMMs and their comparisions

• FormalGrammars

  3.4 0.0 Haskell

  (Context-free) grammars in formal language theory

• SelectSequencesFromMSA

  3.4 3.5 Haskell

  ...

• Taxonomy

  2.2 0.0 Haskell

  Libary for parsing, processing and vizualization of taxonomy data

• TaxonomyTools

  2.2 0.0 Haskell

  Tool for parsing, processing, comparing and visualizing taxonomy data

• BioHMM

  1.8 0.0 Haskell

  Libary for Hidden Markov Models in HMMER3 format.

• mmtf

  1.8 5.1 Haskell

  Macromolecular Transmission Format implementation

• ClustalParser

  1.8 1.2 Haskell

  Libary for parsing Clustal tools output

• seqloc

  1.8 0.0 Haskell

  Handle sequence locations for bioinformatics

• StockholmAlignment

  1.3 0.0 Haskell

  Libary for Stockholm aligmnent format

• ViennaRNAParser

  1.3 0.0 Haskell

  Libary for parsing ViennaRNA package output

• memexml

  1.3 0.0 Haskell

  Library for reading Meme XML output

• Forestry

  1.1 0.0 Haskell

  Comparison of trees and forests.

• ADPfusionForest

  1.1 0.0 Haskell

  Dynamic programming on tree and forest structures

• Gene-CluEDO

  1.1 0.0 Haskell

  Hox gene clustering

• rank-product

  0.8 2.4 Haskell

  Find the rank product of a data set.

• MutationOrder

  0.8 0.0 Haskell

  Most likely order of mutation events in RNA