memexml alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view memexml alternatives based on common mentions on social networks and blogs.

hemokit

8.4 0.0 memexml VS hemokit

Haskell library for the Emotiv EEG, inspired by the Emokit code
cobot

7.6 1.6 memexml VS cobot

Computational biology toolkit to collaborate with researchers in constructive protein engineering

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hPDB

7.4 0.0 memexml VS hPDB

PDB parser in Haskell
cobot-io

7.2 2.9 memexml VS cobot-io

Biological data file formats and IO
samtools

6.8 0.0 memexml VS samtools

[Moved to: https://github.com/ingolia/SamTools]
RNAlien

6.6 0.0 memexml VS RNAlien

RNAlien - unsupervised RNA family model construction
bioinformatics-toolkit

6.0 0.0 memexml VS bioinformatics-toolkit

A collection of bioinformatics algorithms
Genbank

5.6 1.4 memexml VS Genbank

Genbank format tools and parser
BlastHTTP

5.4 0.0 memexml VS BlastHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
FormalGrammars

5.2 0.0 memexml VS FormalGrammars

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)
cobot-tools

5.0 3.6 memexml VS cobot-tools

Biological data file formats and IO
EntrezHTTP

5.0 0.0 memexml VS EntrezHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
phybin

4.9 0.0 memexml VS phybin

Binning (Newick) Phylogenetic Trees by Topology
vcf

4.9 0.0 memexml VS vcf

Haskell library to handle VCF (Variant Call Format) files
cmv

4.7 0.0 memexml VS cmv

Visualize HMMs, CMs and their comparisons
TaxonomyTools

4.2 0.0 memexml VS TaxonomyTools

Tools to process and visualize NCBI taxonomy data
Taxonomy

3.9 0.0 memexml VS Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
SelectSequencesFromMSA

3.9 0.0 memexml VS SelectSequencesFromMSA

Tool to select representative sequences from a multiple sequence alignment
seqloc

2.9 0.0 memexml VS seqloc

Bio.SeqLoc
ClustalParser

2.8 0.0 memexml VS ClustalParser

Parse output of Clustal tools
ViennaRNAParser

2.5 0.0 memexml VS ViennaRNAParser

Libary for parsing ViennaRNA package output
BioHMM

2.5 0.0 memexml VS BioHMM

Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format.
StockholmAlignment

2.4 0.0 memexml VS StockholmAlignment

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.
uniprot-kb

2.1 0.0 memexml VS uniprot-kb

UniProt-KB format parser
Forestry

2.1 0.0 memexml VS Forestry

Science and craft of forests
Gene-CluEDO

1.9 0.0 memexml VS Gene-CluEDO

Gene Cluster Evolution Determined Order
ADPfusionForest

1.8 0.0 memexml VS ADPfusionForest

Dynamic programming on tree and forest structures
MutationOrder

1.5 0.0 memexml VS MutationOrder

most likely order of mutation events in RNA
rank-product

1.5 0.0 memexml VS rank-product

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
mmtf

0.8 0.0 memexml VS mmtf

MMTF for Haskell
bio-sequence

- - memexml VS bio-sequence

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memexml

Parse Multiple EM for Motif Elicitation (MEME) XML output. XML parsing is done with the HXT libary. For more information on MEME consult: Meme homepage

memexml

Haskell cabal libary for parsing Meme motif finder xml output

memexml alternatives and similar packages

Popular Comparisons

README