BioHMM alternatives and similar packages

Based on the "Bioinformatics" category.
Alternatively, view BioHMM alternatives based on common mentions on social networks and blogs.

hemokit

8.4 0.0 BioHMM VS hemokit

Haskell library for the Emotiv EEG, inspired by the Emokit code
cobot

7.8 1.8 BioHMM VS cobot

Computational biology toolkit to collaborate with researchers in constructive protein engineering

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hPDB

7.3 3.3 BioHMM VS hPDB

PDB parser in Haskell
cobot-io

7.3 1.9 BioHMM VS cobot-io

Biological data file formats and IO
samtools

6.8 0.0 BioHMM VS samtools

DISCONTINUED. [Moved to: https://github.com/ingolia/SamTools]
RNAlien

6.3 0.0 BioHMM VS RNAlien

RNAlien - unsupervised RNA family model construction
phybin

6.1 0.0 BioHMM VS phybin

Binning (Newick) Phylogenetic Trees by Topology
bioinformatics-toolkit

5.5 0.0 BioHMM VS bioinformatics-toolkit

A collection of bioinformatics algorithms
Genbank

5.4 0.0 BioHMM VS Genbank

Genbank format tools and parser
cmv

5.2 0.0 BioHMM VS cmv

Visualize HMMs, CMs and their comparisons
vcf

5.1 0.0 BioHMM VS vcf

Haskell library to handle VCF (Variant Call Format) files
BlastHTTP

5.1 0.0 BioHMM VS BlastHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
cobot-tools

5.0 3.6 BioHMM VS cobot-tools

DISCONTINUED. Biological data file formats and IO
FormalGrammars

4.9 0.0 BioHMM VS FormalGrammars

Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)
EntrezHTTP

4.7 0.0 BioHMM VS EntrezHTTP

Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
SelectSequencesFromMSA

4.0 0.0 BioHMM VS SelectSequencesFromMSA

Tool to select representative sequences from a multiple sequence alignment
TaxonomyTools

3.8 0.0 BioHMM VS TaxonomyTools

Tools to process and visualize NCBI taxonomy data
Taxonomy

3.5 0.0 BioHMM VS Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
ClustalParser

3.2 0.0 BioHMM VS ClustalParser

Parse output of Clustal tools
ViennaRNAParser

2.9 0.0 BioHMM VS ViennaRNAParser

Libary for parsing ViennaRNA package output
memexml

2.9 0.0 BioHMM VS memexml

Haskell cabal libary for parsing Meme motif finder xml output
StockholmAlignment

2.9 0.0 BioHMM VS StockholmAlignment

Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format.
seqloc

2.3 0.0 BioHMM VS seqloc

Bio.SeqLoc
uniprot-kb

1.6 0.0 BioHMM VS uniprot-kb

UniProt-KB format parser
Forestry

1.6 0.0 BioHMM VS Forestry

Science and craft of forests
Gene-CluEDO

1.3 0.0 BioHMM VS Gene-CluEDO

Gene Cluster Evolution Determined Order
mmtf

1.3 0.0 BioHMM VS mmtf

MMTF for Haskell
ADPfusionForest

1.3 0.0 BioHMM VS ADPfusionForest

Dynamic programming on tree and forest structures
MutationOrder

1.0 0.0 BioHMM VS MutationOrder

most likely order of mutation events in RNA
rank-product

1.0 0.0 BioHMM VS rank-product

Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
bio-sequence

- - BioHMM VS bio-sequence

DISCONTINUED. Initial project template from stack