Genbank alternatives and similar packages
Based on the "Bioinformatics" category.
Alternatively, view Genbank alternatives based on common mentions on social networks and blogs.
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cobot
Computational biology toolkit to collaborate with researchers in constructive protein engineering -
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BlastHTTP
Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice -
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EntrezHTTP
Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice -
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Taxonomy
Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources. -
BioHMM
Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format. -
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StockholmAlignment
Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format. -
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rank-product
Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value. -
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Genbank
Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format. For more information on genbank refer to:
http://www.ncbi.nlm.nih.gov/genbank/
For a sample genbank record see:
http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html
Datastructures for Genbank format (GenbankData.hs)
Contains Haskell datastructures for Genbank format and for contained features, subfeatures
Parse Genbank format (GenbankParser.hs)
Contains Haskell functions to parse Genbank format from files or internal Strings.
Tools for processing Genbank (GenbankTools)
Contains Haskell functions to extract nucleotide sequences for features