(Context-free) grammars in formal language theory

FormalGrammars alternatives and similar packages

Based on the "Bioinformatics" category

• hemokit

  8.3 0.0 FormalGrammars VS hemokit

  Haskell port of the Emokit EEG project

• hPDB

  7.6 0.0 FormalGrammars VS hPDB

  Protein Databank file format library

• cobot

  7.5 4.7 FormalGrammars VS cobot

  ...

• RNAlien

  6.8 7.5 FormalGrammars VS RNAlien

  Unsupervized construction of RNA family models

• samtools

  6.6 0.0 FormalGrammars VS samtools

  Binding to the C samtools library

• bioinformatics-toolkit

  6.0 4.1 FormalGrammars VS bioinformatics-toolkit

  A collection of bioinformatics tools

• cobot-io

  6.0 5.7 FormalGrammars VS cobot-io

  Biological data file formats and IO

• EntrezHTTP

  5.5 0.0 FormalGrammars VS EntrezHTTP

  Libary to interface with the NCBI Entrez REST service.

• Genbank

  5.5 5.2 FormalGrammars VS Genbank

  Libary for processing the NCBI genbank format

• vcf

  5.4 0.0 FormalGrammars VS vcf

  A package to parse VCF files inspired in similar python libraries

• cobot-tools

  5.0 3.6 FormalGrammars VS cobot-tools

  Biological data file formats and IO

• phybin

  4.8 3.1 FormalGrammars VS phybin

  ...

• SelectSequencesFromMSA

  4.6 0.0 FormalGrammars VS SelectSequencesFromMSA

  ...

• BlastHTTP

  4.1 2.4 FormalGrammars VS BlastHTTP

  Libary to interface with the NCBI blast REST interface

• TaxonomyTools

  4.0 1.0 FormalGrammars VS TaxonomyTools

  Tool for parsing, processing, comparing and visualizing taxonomy data

• cmv

  3.8 0.0 FormalGrammars VS cmv

  Detailed visualization of CMs, HMMs and their comparisions

• memexml

  3.1 0.0 FormalGrammars VS memexml

  Library for reading Meme XML output

• StockholmAlignment

  3.1 0.0 FormalGrammars VS StockholmAlignment

  Libary for Stockholm aligmnent format

• seqloc

  2.1 0.0 FormalGrammars VS seqloc

  Handle sequence locations for bioinformatics

• Taxonomy

  2.1 0.0 FormalGrammars VS Taxonomy

  Libary for parsing, processing and vizualization of taxonomy data

• uniprot-kb

  2.0 0.0 FormalGrammars VS uniprot-kb

  UniProt-KB format parser

• mmtf

  1.8 4.0 FormalGrammars VS mmtf

  Macromolecular Transmission Format implementation

• BioHMM

  1.8 0.0 FormalGrammars VS BioHMM

  Libary for Hidden Markov Models in HMMER3 format.

• ClustalParser

  1.8 0.0 FormalGrammars VS ClustalParser

  Libary for parsing Clustal tools output

• Gene-CluEDO

  1.5 0.0 FormalGrammars VS Gene-CluEDO

  Hox gene clustering

• ADPfusionForest

  1.5 0.0 FormalGrammars VS ADPfusionForest

  Dynamic programming on tree and forest structures

• ViennaRNAParser

  1.3 0.0 FormalGrammars VS ViennaRNAParser

  Libary for parsing ViennaRNA package output

• Forestry

  1.1 0.0 FormalGrammars VS Forestry

  Comparison of trees and forests.

• MutationOrder

  0.8 0.0 FormalGrammars VS MutationOrder

  Most likely order of mutation events in RNA

• rank-product

  0.8 0.9 FormalGrammars VS rank-product

  Find the rank product of a data set.

• bio-sequence

  - - FormalGrammars VS bio-sequence

  Initial project template from stack

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Popular Comparisons

• FormalGrammars
  vs
  ViennaRNAParser
• memexml
  vs
  ClustalParser
• MutationOrder
  vs
  Gene-CluEDO
• MutationOrder
  vs
  TaxonomyTools
• rank-product
  vs
  Taxonomy

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