Popularity
4.9
Declining
Activity
0.0
Stable
4
3
3
Monthly Downloads: 16
Programming language: Haskell
License: GNU General Public License v3.0 only
Latest version: v0.3.2.0
FormalGrammars alternatives and similar packages
Based on the "Bioinformatics" category.
Alternatively, view FormalGrammars alternatives based on common mentions on social networks and blogs.
-
hemokit
Haskell library for the Emotiv EEG, inspired by the Emokit code -
cobot
Computational biology toolkit to collaborate with researchers in constructive protein engineering -
-
-
bioinformatics-toolkit
A collection of bioinformatics algorithms -
BlastHTTP
Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice -
EntrezHTTP
Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice -
SelectSequencesFromMSA
Tool to select representative sequences from a multiple sequence alignment -
TaxonomyTools
Tools to process and visualize NCBI taxonomy data -
Taxonomy
Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources. -
StockholmAlignment
Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent format. -
memexml
Haskell cabal libary for parsing Meme motif finder xml output -
BioHMM
Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models in HMMER3 format. -
ViennaRNAParser
Libary for parsing ViennaRNA package output -
-
ADPfusionForest
Dynamic programming on tree and forest structures -
rank-product
Collects the functions pertaining to finding the rank product of a data set as well as the associated p-value.
Access the most powerful time series database as a service
Ingest, store, & analyze all types of time series data in a fully-managed, purpose-built database. Keep data forever with low-cost storage and superior data compression.
Promo
www.influxdata.com
Do you think we are missing an alternative of FormalGrammars or a related project?
|
Static code analysis for 29 languages.
sponsored
www.sonarqube.org
|
Popular Comparisons
-
FormalGrammarsvsViennaRNAParser
-
MutationOrdervsrank-product
-
ClustalParservsMutationOrder
-
memexmlvsTaxonomyTools
-
Taxonomyvsrank-product
|
SaaSHub - Software Alternatives and Reviews
sponsored
www.saashub.com
|
README
FormalGrammars: A DSL for formal languages in Haskell
generalized Algebraic Dynamic Programming Homepage
The gADP homepage has a tutorial and example on how to write algorithms / grammars.
Ideas implemented here are described in a couple of papers:
- Christian Hoener zu Siederdissen
Sneaking Around ConcatMap: Efficient Combinators for Dynamic Programming
2012, Proceedings of the 17th ACM SIGPLAN international conference on Functional programming
paper preprint - Andrew Farmer, Christian Höner zu Siederdissen, and Andy Gill.
The HERMIT in the stream: fusing stream fusion’s concatMap
2014, Proceedings of the ACM SIGPLAN 2014 workshop on Partial evaluation and program manipulation.
paper - Christian Höner zu Siederdissen, Ivo L. Hofacker, and Peter F. Stadler.
Product Grammars for Alignment and Folding
2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics. 99
paper - Christian Höner zu Siederdissen, Sonja J. Prohaska, and Peter F. Stadler
Algebraic Dynamic Programming over General Data Structures
2015, BMC Bioinformatics
preprint - Maik Riechert, Christian Höner zu Siederdissen, and Peter F. Stadler
Algebraic dynamic programming for multiple context-free languages
2016, Theoretical Computer Science
preprint
Contact
Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
[email protected]
http://www.bioinf.uni-leipzig.de/~choener/